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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-DPA1, major histocompatibility complex, class II, DP alpha 1
Sequence ID:NM_001242524
NM_001242525
NM_033554
Entrez Gene ID:3113
Ensembl ID:ENSG00000231389

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 33036257 - 33041361

Transcript StartTranscript EndChromosomal Start Chromosomal End
13313303279333033123
3324983303641433036580
4997803303679533037076
78110263303741733037662
102711573304124733041377

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4309471Full LengthBC009956major histocompatibility complex, class II, DP alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_291032  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001242524 NP_001229453    
NM_001242525 NP_001229454    
NM_033554 NP_291032 P20036 MHC_II_alpha
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M27487 AAA63220 P20036
BC009956 AAH09956 Q95HB9
DQ893463 ABM84389  
DQ896324 ABM87323  
AB209058 BAD92295 Q59GQ1
AK292709 BAF85398 P20036
X00457 CAA25143 P20036

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLA-DPA1 NP_291032 R.norvegicus RT1-Ha 24986   NP_001008848 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)