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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CXCR6, chemokine (C-X-C motif) receptor 6
Sequence ID:NM_006564
RefSeqGene ID:NG_031955
Entrez Gene ID:10663
Ensembl ID:ENSG00000172215

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 45987973 - 45989002

NM_006564 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1604598497245985031
6119534598795245989844

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5225727Full LengthBC033584chemokine (C-X-C motif) receptor 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006555  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006564 NP_006555 O00574 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
U73529 AAB61456 O00574
U73531 AAB61457 O00574
AF007545 AAB64221 O00574
BC033584 AAH33584 O00574
DQ892101 ABM83027  
DQ895294 ABM86220  
AK313754 BAG36493 A0N0N3
Y13248 CAA73698 O00574

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CXCR6 NP_006555 M.musculus Cxcr6 80901 Gene Info NP_109637 76
R.norvegicus Cxcr6 100124593   NP_001096057 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)