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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. ATP2B4, ATPase, Ca++ transporting, plasma membrane 4
Sequence ID:NM_001001396
RefSeqGene ID:NG_029589
Entrez Gene ID:493
Ensembl ID:ENSG00000058668

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q32.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 203681133 - 203713209

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860318Full LengthBC150293ATPase, Ca++ transporting, plasma membrane 4
9021642Full LengthBC140774ATPase, Ca++ transporting, plasma membrane 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001396  NP_001675  

Protein Infomation

NM_001001396 NP_001001396   E1-E2_ATPase
NM_001684 NP_001675   E1-E2_ATPase

Related Sequences

M83363 AAA36455 P23634 EC
M25874 AAA50819 P23634 EC
U42026 AAB17577 P23634 EC
U42061 AAB17578 P23634 EC
U42062 AAB17579 P23634 EC
U42378 AAB17580 P23634 EC
BC140774 AAI40775 P23634 EC
BC150293 AAI50294 A7E2D8  
DQ201780 ABG24244 A1X4Q1  
DQ201781 ABG24245 A1X4Q2  
AK292458 BAF85147 A8K8U3  
BX537444 CAD97686 P23634 EC
CR749393 CAH18241 Q68DH9  
AM393326 CAL38204    
AM393354 CAL38232    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens ATP2B4 NP_001675 R.norvegicus Atp2b4 29600   NP_001005871 88
M.musculus Atp2b4 381290 Gene Info NP_998781 85
A.gambiae AgaP_AGAP010638 1272551   XP_311357 66
D.melanogaster PMCA 43787   NP_001188515 66
A.thaliana ACA1 839670   NP_849716 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)