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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNRNP40, small nuclear ribonucleoprotein 40kDa (U5)
Sequence ID:NM_004814
Entrez Gene ID:9410
Ensembl ID:ENSG00000060688

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 31732519 - 31769611

NM_004814 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
175683173241631732967
5696723173437531734478
6737343174071731740778
7358173174200431742086
8189383174422531744345
93910613175422031754342
106212273176210031762265
122813213176475931764852
132214513176606531766194
145216383176945731769643

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3504573Full LengthBC001494small nuclear ribonucleoprotein 40kDa (U5)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004805  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004814 NP_004805 Q96DI7 WD40

Related Sequences

 
mRNAGenPeptSwissProt
AF090988 AAC69625 Q96DI7
BC001494 AAH01494 Q96DI7
EF011621 ABK41111 A0MNP2
DQ893627 ABM84553  
DQ895442 ABM86368  
AK313800 BAG36536 B2R9I9
AK074516 BAG51963 A0MNP2
AK298823 BAG60953 B4DQJ1
AL157420 CAB75650 Q9NSS8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRNP40 NP_004805 R.norvegicus Snrnp40 313056   NP_001128028 99
M.musculus Snrnp40 66585 Gene Info NP_079921 98
A.gambiae AgaP_AGAP009506 1271405   XP_310190 64
D.melanogaster CG3436 33180   NP_608501 61
A.thaliana AT2G43770 818980   NP_181905 60
C.elegans F08G12.2 181319   NP_509886 56
C.elegans C18E3.5 172015   NP_491325 56
N.crassa NCU05797 3876220   XP_960057 48
S.pombe spf38 2539984   NP_596835 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)