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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COPB1, Coatomer protein complex, subunit beta 1
Sequence ID:NM_016451
NM_001144061
NM_001144062
Entrez Gene ID:1315
Ensembl ID:ENSG00000129083

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p15.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 14479096 - 14521341

 Exon Info From UCSC:
NM_016451
NM_001144061
NM_001144062

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4831366Full LengthBC037280coatomer protein complex, subunit beta 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057535  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001144061 NP_001137533    
NM_001144062 NP_001137534    
NM_016451 NP_057535 P53618 Adaptin_N
DUF1606

Related Sequences

 
mRNAGenPeptSwissProt
AF084457 AAD41240 P53618
BC037280 AAH37280 P53618
AF111807 AAL39009 P53618
DQ892479 ABM83405  
DQ895690 ABM86616  
X82103 CAA57622 P53618
AL136593 CAB66528 P53618
AM393381 CAL38259  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPB1 NP_001137533 M.musculus Copb1 70349 Gene Info NP_203534 99
R.norvegicus Copb1 114023   NP_542959 99
A.gambiae AgaP_AGAP001399 1281778   XP_321735 70
D.melanogaster betaCop 32820   NP_523400 70
C.elegans Y25C1A.5 173656   NP_494441 62
A.thaliana AT4G31480 829275   NP_194876 51
A.thaliana AT4G31490 829276   NP_194877 51
N.crassa NCU04404 3873658   XP_957481 49
S.cerevisiae SEC26 851824   NP_010524 45
S.pombe sec26 2539798   NP_595403 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)