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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. RPL18A, ribosomal protein L18a
Sequence ID:NM_000980
Entrez Gene ID:6142
Ensembl ID:ENSG00000105640

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 17970730 - 17974100

NM_000980 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1531797073017970782
542331797210117972280
2343631797290217973031
3644731797372617973835
4746181797397917974123

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2961519Full LengthBC007512ribosomal protein L18a
5286436Full LengthBC066319ribosomal protein L18a
6293838Full LengthBC071920ribosomal protein L18a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000971  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000980 NP_000971 Q02543 Ribosomal_L18ae

Related Sequences

 
mRNAGenPeptSwissProt
L05093 AAC18781 Q02543
BC007512 AAH07512 Q02543
BC066319 AAH66319 Q02543
BC071920 AAH71920 Q02543
AY779046 AAX47571 Q32XH3
HQ447470 ADQ31956  
JF432574 ADZ15791  
D28393 BAA05759  
AK222647 BAD96367 Q53HD3
AK311774 BAG34717 B2R4C0
AK297323 BAG59786 B4DM74
AK297358 BAG59806 B4DM94
AK300809 BAG62465 B4DUV3
X80822 CAA56788 Q02543

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPL18A NP_000971 M.musculus Rpl18a 76808 Gene Info NP_084027 99
R.norvegicus Rpl18a 290641   NP_997675 99
C.elegans rpl-20 3565264   NP_500630 63
N.crassa NCU08389 3880085   XP_963936 60
S.cerevisiae RPL20B 854489   NP_014957 57
S.cerevisiae RPL20A 855283   NP_013969 57
S.pombe rpl2001 2542725   NP_593336 55
S.pombe rpl2002 2542093   NP_594147 55
A.thaliana AT1G29965 839875   NP_849729 54
A.thaliana RPL18AA 839876   NP_001077626 54
A.thaliana AT2G34480 818011   NP_180995 53
A.thaliana AT3G14600 820688   NP_188078 51
P.falciparum PF13_0224 814191   XP_001350134 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)