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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ARCN1, archain 1
Sequence ID:NM_001142281
NM_001655
Entrez Gene ID:372
Ensembl ID:ENSG00000095139

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 118443104 - 118471708

 Exon Info From UCSC:
NM_001142281
NM_001655

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939481Full LengthBC093636archain 1
7939483Full LengthBC093638archain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001646  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001142281 NP_001135753    
NM_001655 NP_001646 P48444 Adap_comp_sub

Related Sequences

 
mRNAGenPeptSwissProt
BC064936 AAH64936 Q6P1Q5
BC093636 AAH93636 P48444
BC093638 AAH93638 P48444
AK312298 BAG35225 B0YIW5
AK304019 BAG64934 B4E1X2
X81197 CAA57071 P48444
BX640860 CAE45922 Q6MZV5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ARCN1 NP_001646 M.musculus Arcn1 213827 Gene Info NP_666097 99
R.norvegicus Arcn1 300674   NP_001007663 99
A.gambiae AgaP_AGAP010719 1272520   XP_311433 62
D.melanogaster deltaCOP 45250   NP_001162642 61
C.elegans C13B9.3 175940   NP_498463 53
A.thaliana AT5G05010 830383   NP_001031836 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)