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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RP1L1, retinitis pigmentosa 1-like 1
Sequence ID:NM_178857
RefSeqGene ID:NG_028035
Entrez Gene ID:94137
Ensembl ID:ENSG00000183638

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
OCCULT MACULAR DYSTROPHY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:8p23.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 10463881 - 10512666

NM_178857 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
469981046386110470855
699971401047395510474096
714177681048010210480729
776979781051240710512616

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_849188  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178857 NP_849188   DCX

Related Sequences

 
mRNAGenPeptSwissProt
AY168341 AAN86959 Q8IWN7
AY168342 AAN86960 Q8IWN7
AY168343 AAN86961 Q8IWN7
AY168344 AAN86962 Q8IWN7
AY168345 AAN86963 Q8IWN7
AY168346 AAN86964 Q8IWN7
AJ491324 CAD36957 Q8IWN7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RP1L1 NP_849188 M.musculus Rp1l1 271209 Gene Info NP_666358 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)