Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LGI3, Leucine-rich repeat LGI family, member 3
Sequence ID:NM_139278
Entrez Gene ID:203190
Ensembl ID:ENSG00000168481

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 22005665 - 22014264

NM_139278 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2221672200434422006489
216823322200900122009165
233325022200934322009512
250325742201148022011551
257526462201165422011725
264727182201207222012143
271927902201290422012975
279132852201384922014343

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860454Full LengthBC142997leucine-rich repeat LGI family, member 3
5196180IncompleteBC042542leucine-rich repeat LGI family, member 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_644807  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139278 NP_644807 Q8N145 LRR_1
EPTP

Related Sequences

 
mRNAGenPeptSwissProt
BC042542 AAH42542 Q8N145
BC142997 AAI42998 A5PLP2
AF467956 AAM49554 Q8N145
AY358116 AAQ88483 Q8N145
AK090946 BAC03553 Q8N145
AJ487518 CAD31786 Q8N145
AJ487961 CAD32308 Q8N145

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LGI3 NP_644807 M.musculus Lgi3 213469 Gene Info NP_660254 97
R.norvegicus Lgi3 306013   NP_001100747 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)