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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNRPE, small nuclear ribonucleoprotein polypeptide E
Sequence ID:NM_003094
Entrez Gene ID:6635
Ensembl ID:ENSG00000182004

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 203830726 - 203839206

NM_003094 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1102203830739203830840
103129203831323203831349
130192203832790203832852
193271203834168203834246
2721545203839004203840277

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3609230Full LengthBC002639small nuclear ribonucleoprotein polypeptide E
5204266Full LengthBC090951small nuclear ribonucleoprotein polypeptide E
5727660IncompleteBC072433small nuclear ribonucleoprotein polypeptide E

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003085  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003094 NP_003085 P62304 LSM

Related Sequences

 
mRNAGenPeptSwissProt
M15919 AAA36621 P62304
M37716 AAA90926 P62304
BC002639 AAH02639 P62304
BC090951 AAH90951 P62304
AK312130 BAG35066 P62304
X12466 CAA31007 P62304

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPE NP_003085 M.musculus Snrpe 20643 Gene Info NP_033253 100
R.norvegicus LOC100360682 100360682   XP_002728052 100
A.gambiae AgaP_AGAP010440 1272597   XP_311506 77
D.melanogaster SmE 34080   NP_609162 77
A.thaliana AT4G30330 829156   NP_567844 69
A.thaliana AT2G18740 816389   NP_179464 68
C.elegans snr-6 176668   NP_499620 67
P.falciparum MAL13P1.253 813814   XP_001350215 56
S.cerevisiae SME1 854330   NP_014802 54
S.pombe sme1 2539607   NP_595724 54
N.crassa NCU06354 3878527   XP_962388 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta