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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MRPL13, mitochondrial ribosomal protein L13
Sequence ID:NM_014078
Entrez Gene ID:28998
Ensembl ID:ENSG00000172172

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22.1-q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 121408082 - 121457373

NM_014078 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
5285121408083121408363
286407121426229121426350
408494121432091121432177
495555121437545121437605
556649121444269121444362
650773121455424121455547
7741113121457307121457646

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3956315Full LengthBC009190mitochondrial ribosomal protein L13
5260243Full LengthBC021744mitochondrial ribosomal protein L13

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_054797  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014078 NP_054797 Q9BYD1 Ribosomal_L13

Related Sequences

 
mRNAGenPeptSwissProt
AF112214 AAF17202 Q9BYD1
BC009190 AAH09190 Q9BYD1
BC021744 AAH21744 Q9BYD1
DQ893117 ABM84043  
DQ893487 ABM84413  
DQ896395 ABM87394  
AB049640 BAB40845 Q9BYD1
AK311924 BAG34865 Q9BYD1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MRPL13 NP_054797 M.musculus Mrpl13 68537 Gene Info NP_081035 89
R.norvegicus Mrpl13 299938   NP_001006986 89
A.gambiae AgaP_AGAP009908 1279321   XP_319028 48
D.melanogaster mRpL13 35145   NP_523598 47
C.elegans F13G3.11 172479   NP_492067 40
S.cerevisiae MRPL23 854321   NP_014793 39
S.pombe mrpl23 2540088   NP_596753 37
N.crassa NCU07852 3879252   XP_963113 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)