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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TNFSF11, tumor necrosis factor (ligand) superfamily, member 11
Sequence ID:NM_003701
NM_033012
RefSeqGene ID:NG_008990
Entrez Gene ID:8600
Ensembl ID:ENSG00000120659

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 43145794 - 43181155

 Exon Info From UCSC:
NM_003701
NM_033012

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30915245Full LengthBC074890tumor necrosis factor (ligand) superfamily, member 11
30915538Full LengthBC074823tumor necrosis factor (ligand) superfamily, member 11
40125837Full LengthBC117286tumor necrosis factor (ligand) superfamily, member 11
40125839Full LengthBC117288tumor necrosis factor (ligand) superfamily, member 11

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_143026  NP_003692  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003701 NP_003692 Q5T9Y4
O14788
TNF
NM_033012 NP_143026 Q54A98 TNF

Related Sequences

 
mRNAGenPeptSwissProt
AF019047 AAB86811 Q5T9Y4
O14788
AF053712 AAC39731 Q5T9Y4
O14788
AF013171 AAC51762 O14788
BC074823 AAH74823 Q5T9Y4
O14788
BC074890 AAH74890 Q5T9Y4
O14788
BC117286 AAI17287 Q5T9Y4
BC117288 AAI17289 Q5T9Y4
HQ258604 ADR83357  
AB037599 BAA90488 Q54A98
O14788
AB061227 BAB71768 O14788
AB064268 BAB79693 Q54A98
AB064269 BAB79694 Q5T9Y4
O14788
AB064270 BAB79695 O14788

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNFSF11 NP_003692 M.musculus Tnfsf11 21943 Gene Info NP_035743 85
R.norvegicus Tnfsf11 117516   NP_476490 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta