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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEMA3F, sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Sequence ID:NM_004186
Entrez Gene ID:6405
Ensembl ID:ENSG00000001617

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 50192523 - 50226507

 Exon Info From UCSC:
NM_004186

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5477898Full LengthBC042914sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004177  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004186 NP_004177 Q13275 ig
Sema

Related Sequences

 
mRNAGenPeptSwissProt
U32171 AAB06011 Q13275
U32172 AAB06012 Q13275
U38276 AAB18276 Q13275
U33920 AAC50568 Q13275
BC042914 AAH42914 Q13275
AB209259 BAD92496 Q59G50

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEMA3F NP_004177 M.musculus Sema3f 20350 Gene Info NP_035479 96
R.norvegicus Sema3f 315996   NP_001101655 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)