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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SMARCA4, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Sequence ID:NM_001128844
NM_001128845
NM_001128846
NM_001128847
NM_001128848
NM_001128849
NM_003072
RefSeqGene ID:NG_011556
Entrez Gene ID:6597
Ensembl ID:ENSG00000127616

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 11132460 - 11172735

 Exon Info From UCSC:
NM_001128844
NM_001128845
NM_001128846
NM_001128847
NM_001128848
NM_001128849
NM_003072

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860365Full LengthBC150298SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
9020634Full LengthBC136644SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
40148118IncompleteBC139917SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
40148973IncompleteBC139924SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
100013606BC151849SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003063  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001128844 NP_001122316    
NM_001128845 NP_001122317    
NM_001128846 NP_001122318    
NM_001128847 NP_001122319    
NM_001128848 NP_001122320    
NM_001128849 NP_001122321    
NM_003072 NP_003063 P51532 SNF2_N
Helicase_C
Bromodomain
HSA
TCH

Related Sequences

 
mRNAGenPeptSwissProt
U29175 AAB40977 P51532
BC136644 AAI36645 B9EGQ8
BC139917 AAI39918 A5D6X0
BC139924 AAI39925 A5D6X0
BC150298 AAI50299 A7E2E1
BC151849 AAI51850  
EU430756 ACA09750 P51532
EU430757 ACA09751 P51532
EU430758 ACA09752 P51532
EU430759 ACA09753 P51532
D26156 BAA05143 P51532
AB209313 BAD92550 Q59FZ6
AK290033 BAF82722 A7E2E1
AK055168 BAG51479 B3KNW7
AK299761 BAG61650 B4DSI8
AK303352 BAG64413 B4E0F1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCA4 NP_001122321 M.musculus Smarca4 20586 Gene Info NP_001167549 99
R.norvegicus Smarca4 171379   NP_599195 99
A.gambiae AgaP_AGAP010462 1272575   XP_311484 63
D.melanogaster brm 39744   NP_536746 60
C.elegans psa-4 178015   NP_502082 56
A.thaliana ATCHR12 819772   NP_187252 47
A.thaliana AT5G19310 832051   NP_197432 46
S.cerevisiae SNF2 854465   NP_014933 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta