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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRPT1, tRNA phosphotransferase 1
Sequence ID:NM_001033678
NM_001160389
NM_001160390
NM_001160392
NM_001160393
NM_031472
Entrez Gene ID:83707
Ensembl ID:ENSG00000149743

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 63991318 - 63993681

 Exon Info From UCSC:
NM_001033678
NM_001160389
NM_001160390
NM_001160392
NM_001160393
NM_031472

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3836683Full LengthBC005133tRNA phosphotransferase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_113660  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001033678 NP_001028850 Q86TN4 EC 2.7.1.160  
NM_001160389 NP_001153861      
NM_001160390 NP_001153862      
NM_001160392 NP_001153864      
NM_001160393 NP_001153865      
NM_031472 NP_113660     PTS_2-RNA

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC005133 AAH05133 Q86TN4 EC 2.7.1.160
AY211494 AAO62941 Q86TN4 EC 2.7.1.160
HQ448355 ADQ32835    

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRPT1 NP_001153861 M.musculus Trpt1 107328 Gene Info NP_705825 84
R.norvegicus Trpt1 293704   NP_001099801 83
S.pombe SPAC2C4.12c 2541572   NP_594515 45
A.thaliana emb1067 819141   NP_182058 43
A.thaliana AT5G23600 832426   NP_197750 41
D.melanogaster CG33057 318833   NP_788477 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)