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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TARBP2, TAR (HIV-1) RNA binding protein 2
Sequence ID:NM_004178
NM_134323
NM_134324
Entrez Gene ID:6895
Ensembl ID:ENSG00000139546

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q12-q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 53894660 - 53895323

 Exon Info From UCSC:
NM_004178
NM_134323
NM_134324

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2960701Full LengthBC005860TAR (HIV-1) RNA binding protein 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_599151  NP_004169  NP_599150  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004178 NP_004169   dsrm
NM_134323 NP_599150 Q15633 dsrm
NM_134324 NP_599151   dsrm

Related Sequences

 
mRNAGenPeptSwissProt
M60801 AAA36765 Q15633
U08998 AAB50581 Q15633
BC005860 AAH05860 Q15633
BT007140 AAP35804 Q15633
DQ893549 ABM84475  
DQ893931 ABM84857  
AK290737 BAF83426 A8K3X2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TARBP2 NP_599150 M.musculus Tarbp2 21357 Gene Info NP_033345 95
R.norvegicus Tarbp2 363006   NP_001030113 93
D.melanogaster loqs 34751   NP_609646 38
A.gambiae AgaP_AGAP009781 1279194   XP_318876 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)