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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SNAP47, synaptosomal-associated protein, 47kDa
Sequence ID:NM_053052
Entrez Gene ID:116841
Ensembl ID:ENSG00000143740

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q42.13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 227923136 - 227964670

NM_053052 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1504227922696227923199
5051046227935392227935933
10471537227946695227947185
15381662227954659227954783
16632367227968227227968931

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4300396Full LengthBC018760synaptosomal-associated protein, 47kDa
3139971IncompleteBC007786synaptosomal-associated protein, 47kDa
3451454IncompleteBC011145synaptosomal-associated protein, 47kDa
3459631IncompleteBC001332synaptosomal-associated protein, 47kDa
3659680IncompleteBC004418synaptosomal-associated protein, 47kDa
3936239IncompleteBC014059synaptosomal-associated protein, 47kDa
4139762IncompleteBC025231synaptosomal-associated protein, 47kDa

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053052 NP_444280 Q5SQN1  

Related Sequences

 
mRNAGenPeptSwissProt
BC001332 AAH01332 Q5SQN1
BC004418 AAH04418 Q5SQN1
BC007786 AAH07786 Q5SQN1
BC011145 AAH11145 Q5SQN1
BC014059 AAH14059 Q5SQN1
BC018760 AAH18760 Q5SQN1
BC025231 AAH25231 Q5SQN1
AY090635 AAM09082 Q5SQN1
FJ236305 ACI45237 Q5SQN1
AK054633 BAB70779 Q5SQN1
BX648570 CAI45994 Q5SQN1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNAP47 NP_444280 R.norvegicus Snap47 303183   NP_955421 73
M.musculus Snap47 67826 Gene Info NP_653104 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)