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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. POT1, protection of telomeres 1 homolog (S. pombe)
Sequence ID:NM_001042594
NM_015450
NR_003102
NR_003103
NR_003104
RefSeqGene ID:NG_029232
Entrez Gene ID:25913
Ensembl ID:ENSG00000128513

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q31.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 124463312 - 124537250

 Exon Info From UCSC:
NM_001042594
NM_015450

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3955573Full LengthBC002923POT1 protection of telomeres 1 homolog (S. pombe)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056265  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042594 NP_001036059    
NM_015450 NP_056265 Q9NUX5 Telo_bind

Related Sequences

 
mRNAGenPeptSwissProt
BC002923 AAH02923 Q9NUX5
AY823520 AAW22613 Q9NUX5
AY823521 AAW22614 Q5MJ35
AY823522 AAW22615 Q5MJ34
AY823523 AAW22616 Q5MJ33
AY823524 AAW22617 Q5MJ32
DQ892765 ABM83691  
DQ896010 ABM87009  
AK001230 BAA91568 Q9NUX5
AK001935 BAA91988 Q9NUX5
AK022580 BAB14110 Q9NUX5
AK026234 BAB15404 Q9NUX5
AK302263 BAH13661 B7Z7M5
AL050120 CAB43281 Q9NUX5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens POT1 NP_056265 R.norvegicus Pot1 500054   NP_001019493 77
M.musculus Pot1a 101185 Gene Info NP_598692 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)