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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTCHD1, patched domain containing 1
Sequence ID:NM_173495
RefSeqGene ID:NG_021300
Entrez Gene ID:139411
Ensembl ID:ENSG00000165186

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp22.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 23353094 - 23412419

NM_173495 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13592335298423353342
36010202339770723398367
102152902341064723414916

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40118449Full LengthBC121061patched domain containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_775766  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_173495 NP_775766 Q96NR3 Patched

Related Sequences

 
mRNAGenPeptSwissProt
BC062344 AAH62344 Q96NR3
BC121061 AAI21062 Q96NR3
AK054858 BAB70816 Q96NR3
AK298796 BAG60932 Q96NR3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTCHD1 NP_775766 M.musculus Ptchd1 211612 Gene Info NP_001087219 98
R.norvegicus Ptchd1 317517   XP_228985 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)