Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. USP42, Ubiquitin specific peptidase 42
Sequence ID:NM_032172
Entrez Gene ID:84132
Ensembl ID:ENSG00000106346

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7p22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 6150764 - 6196718

 Exon Info From UCSC:
NM_032172

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146884Full LengthBC132862ubiquitin specific peptidase 42
30343487IncompleteBC060846ubiquitin specific peptidase 42

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032172 NP_115548    

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC060846 AAH60846 Q9H9J4 EC 3.4.19.12
BC132862 AAI32863 Q9H9J4 EC 3.4.19.12
AY618868 AAT67238 Q9H9J4 EC 3.4.19.12
AK022759 BAB14232 Q9H9J4 EC 3.4.19.12
AK298164 BAG60437 B4DP25  
AK301527 BAG63029 B4DWG7  
AJ601395 CAE53097 Q9H9J4 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens USP42 NP_115548 R.norvegicus Usp42 288482   NP_001099379 72
M.musculus Usp42 76800 Gene Info NP_084025 71
A.thaliana UBP18 829295   NP_194895 42
A.thaliana UBP19 817000   NP_565576 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)