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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNX5, sorting nexin 5
Sequence ID:NM_014426
NM_152227
Entrez Gene ID:27131
Ensembl ID:ENSG00000089006

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 17922849 - 17949490

 Exon Info From UCSC:
NM_014426
NM_152227

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
7939468Full LengthBC093623sorting nexin 5
7939825Full LengthBC093980sorting nexin 5
9051776Full LengthBC143274sorting nexin 5
5497734IncompleteBC062638sorting nexin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055241  NP_689413  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014426 NP_055241 Q9Y5X3 PX
NM_152227 NP_689413 Q9Y5X3 PX

Related Sequences

 
mRNAGenPeptSwissProt
AF121855 AAD27828 Q9Y5X3
BC062638 AAH62638 Q6P5V6
BC093623 AAH93623 Q9Y5X3
BC093980 AAH93980 Q9Y5X3
BC143274 AAI43275 Q9Y5X3
BT007191 AAP35855 Q7KZN0
AK001793 BAA91914 Q9Y5X3
AK223308 BAD97028 Q53FH8
AK123903 BAG53980 Q7KZN0
AK296947 BAH12462 B7Z476

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNX5 NP_055241 M.musculus Snx5 69178 Gene Info NP_077187 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)