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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EIF1B, eukaryotic translation initiation factor 1B
Sequence ID:NM_005875
Entrez Gene ID:10289
Ensembl ID:ENSG00000114784

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 40351360 - 40353895

NM_005875 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12914035117240351462
2924554035238340352546
4565574035296040353061
55810104035346040353912

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4044439Full LengthBC006996eukaryotic translation initiation factor 1B

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005866  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005875 NP_005866 Q6FG85
O60739
SUI1

Related Sequences

 
mRNAGenPeptSwissProt
AF064607 AAC17112 O60739
AF077052 AAD27785 Q6FG85
O60739
AF263452 AAF79182 Q6FG85
O60739
BC006996 AAH06996 Q6FG85
O60739
AK223448 BAD97168 Q53F41
AK311922 BAG34863 Q6FG85
CR542223 CAG47019 Q6FG85
O60739

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EIF1B NP_005866 M.musculus Eif1b 68969 Gene Info NP_081168 100
R.norvegicus Eif1b 301068   NP_001100337 100
A.thaliana AT5G54760 835566   NP_001119436 59
A.thaliana AT4G27130 828821   NP_194443 59
S.cerevisiae SUI1 855477   NP_014155 59
N.crassa NCU01981 3880485   XP_964345 58
A.thaliana AT1G54290 841870   NP_175831 57
S.pombe sui1 2540672   NP_595863 56
P.falciparum PFL2095w 811471   XP_001350823 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)