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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. EIF3K, Eukaryotic translation initiation factor 3, subunit K
Sequence ID:NM_013234
Entrez Gene ID:27335
Ensembl ID:ENSG00000178982

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39109737 - 39127591

NM_013234 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12463910972139109966
2473453911097639111074
3464663911471639114836
4675413911666739116741
5426083912306939123135
6096863912324039123317
6878123912563239125757
8138793912752839127594

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2988566Full LengthBC007559eukaryotic translation initiation factor 3, subunit K
3139375Full LengthBC001031eukaryotic translation initiation factor 3, subunit K
3658687IncompleteBC007335eukaryotic translation initiation factor 3, subunit K

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_037366  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013234 NP_037366 Q9UBQ5 SAC3_GANP

Related Sequences

 
mRNAGenPeptSwissProt
AF077051 AAD27784 Q9UBQ5
AF085358 AAD40193 Q9UBQ5
BC001031 AAH01031 Q9UBQ5
BC007335 AAH07335 Q9UBQ5
BC007559 AAH07559 Q9UBQ5
AF315506 AAK01365 Q9UBQ5
AY245432 AAP22070 Q9UBQ5
AF109355 AAQ13503 Q9UBQ5
HQ447243 ADQ31730  
AB019392 BAA76626 Q9UBQ5
AK289554 BAF82243 Q9UBQ5
AK298635 BAG60810 B4DQ48
AK301035 BAG62649 B4DVD7
AK316344 BAH14715 B7ZAM9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens EIF3K NP_037366 M.musculus Eif3k 73830 Gene Info NP_082935 99
R.norvegicus Eif3k 292762   NP_001099712 96
A.gambiae EIF3K_ANOGA 1271181   XP_309930 51
D.melanogaster CG10306 37475   NP_611604 49
C.elegans eif-3.K 179779   NP_506241 39
A.thaliana EIF3K 829461   NP_195051 35
N.crassa NCU09707 3875112   XP_958946 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)