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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PRPF6, PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)
Sequence ID:NM_012469
RefSeqGene ID:NG_029719
Entrez Gene ID:24148
Ensembl ID:ENSG00000101161

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 62612516 - 62664416

 Exon Info From UCSC:
NM_012469

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2988165Full LengthBC001666PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036601  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012469 NP_036601 O94906 TPR_1
PRP1_N

Related Sequences

 
mRNAGenPeptSwissProt
AF026031 AAD01798 O94906
AF221842 AAF66128 O94906
BC001666 AAH01666 O94906
AB019219 BAA37140 O94906
AK314310 BAG36962 O94906
AK001554 BAG50938 O94906
AL137320 CAB70695 O94906

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PRPF6 NP_036601 M.musculus Prpf6 68879 Gene Info NP_598462 98
R.norvegicus Prpf6 366276   NP_001073234 98
D.melanogaster CG6841 40064   NP_649073 74
A.gambiae AgaP_AGAP005640 1276326   XP_315659 73
C.elegans Y59A8B.6 180180   NP_507525 58
A.thaliana EMB2770 827925   NP_192252 56
S.pombe prp1 2541185   NP_596086 49
N.crassa NCU04606 3874996   XP_958849 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)