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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDHAF2, Succinate dehydrogenase complex assembly factor 2
Sequence ID:NM_017841
RefSeqGene ID:NG_023393
Entrez Gene ID:54949
Ensembl ID:ENSG00000167985

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 61197596 - 61214229

NM_017841 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1586119759661197653
592826120509661205319
2833926120547561205584
39312176121341261214236

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3535474Full LengthBC002331chromosome 11 open reading frame 79

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060311  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017841 NP_060311 Q9NX18 TPR_div1

Related Sequences

 
mRNAGenPeptSwissProt
BC002331 AAH02331 Q9NX18
AK000494 BAA91204 Q9NX18

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDHAF2 NP_060311 M.musculus Sdhaf2 66072 Gene Info NP_079609 92
R.norvegicus Sdhaf2 361726   NP_001008372 91
D.melanogaster CG14757 35797   NP_610363 56
D.melanogaster CG12895 36103   NP_610586 53
A.gambiae AgaP_AGAP012191 1280494   XP_320341 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)