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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. DDX39A, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A
Sequence ID:NM_005804
NR_038336
NR_046366
NM_001204057
NM_138998
RefSeqGene ID:NG_029055
Entrez Gene ID:10212
Ensembl ID:ENSG00000123136

Database Links

UniGeneEntrez GeneEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 14520721 - 14524032


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820926Full LengthBC001009DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
5017293Full LengthBC032128DEAD (Asp-Glu-Ala-Asp) box polypeptide 39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005795  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_005804 NP_005795 O00148 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U90426 AAB50231 O00148 EC 3.6.4.13
BC001009 AAH01009 O00148 EC 3.6.4.13
BC032128 AAH32128 Q8N5M0  
DQ891387 ABM82313    
DQ894563 ABM85489    
AB254849 BAG16272 B1Q2N1  
AK293911 BAG57295 B4DF34  
AK301847 BAG63290 B4DX78  
AL512698 CAH10601 Q69YT6  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDX39A NP_005795 M.musculus Ddx39 68278 Gene Info NP_932099 97
R.norvegicus Ddx39a 89827   NP_446015 97
C.elegans hel-1 174333   NP_001021985 77
A.thaliana AT5G11170 830986   NP_568244 72
A.thaliana AT5G11200 830990   NP_001154706 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)