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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNTA1, syntrophin, alpha 1
Sequence ID:NM_003098
RefSeqGene ID:NG_011622
Entrez Gene ID:6640
Ensembl ID:ENSG00000101400

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
LONG QT SYNDROME 12 

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 31995769 - 32031126

NM_003098 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
66483199576231996404
6498363199650631996693
83710333199794031998136
103411643200010132000231
116513723200038032000587
137315773200552432005728
157817633202664632026831
176423453203111632031697

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4413197Full LengthBC026215syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)
40022326IncompleteBC113813syntrophin, alpha 1 (dystrophin-associated protein A1, 59kDa, acidic component)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003089  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003098 NP_003089 Q13424 PH
PDZ

Related Sequences

 
mRNAGenPeptSwissProt
S81737 AAB36398 Q13424
U40571 AAC50448 Q13424
BC026215 AAH26215 Q13424
BC113813 AAI13814 Q29RY0
DQ893566 ABM84492  
DQ896816 ABM87815  
AK291994 BAF84683 Q13424
AK095942 BAG53172 B3KTR0
AK301800 BAG63252 B4DX40

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNTA1 NP_003089 M.musculus Snta1 20648 Gene Info NP_033254 94
R.norvegicus Snta1 362242   NP_001094371 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)