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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAB1A, RAB1A, member RAS oncogene family
Sequence ID:NM_004161
NM_015543
Entrez Gene ID:5861
Ensembl ID:ENSG00000138069

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 65315389 - 65315622

 Exon Info From UCSC:
NM_004161
NM_015543

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2900705Full LengthBC000905RAB1A, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004152  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004161 NP_004152 P62820
Q5U0I6
Ras
NM_015543 NP_056358    

Related Sequences

 
mRNAGenPeptSwissProt
M28209 AAA60240 P62820
Q5U0I6
BC000905 AAH00905 P62820
Q5U0I6
AF498929 AAM21077 P62820
Q5U0I6
BT019528 AAV38335 P62820
Q5U0I6
BT019529 AAV38336 P62820
Q5U0I6
DQ894084 ABM85010  
EU831675 ACE86509  
EU831590 ACE87190  
AK055927 BAB71048 P62820
AK315495 BAG37879 Q5U0I6
AK303678 BAH14013 B7Z8M7
AL050268 CAB43369 P62820
BX571747 CAE11872 P62820
Q5U0I6
CR533479 CAG38510 P62820
CR536488 CAG38727 P62820
Q5U0I6
AM392684 CAL37562  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAB1A NP_004152 M.musculus Rab1 19324 Gene Info NP_033022 100
R.norvegicus Rab1 81754   NP_112352 100
D.melanogaster Rab1 42524   NP_732610 85
N.crassa NCU08477 3879294   XP_963146 82
A.gambiae AgaP_AGAP004146 1273973   XP_313029 81
A.thaliana RAB1C 827468   NP_193486 81
A.thaliana RAB1A 834766   NP_568678 81
C.elegans rab-1 178620   NP_503397 80
S.pombe ypt1 2539784   NP_596205 80
S.cerevisiae YPT1 850505   NP_116615 72
P.falciparum Rab1b 812940   XP_001351683 68

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta