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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. SLC22A4, solute carrier family 22 (organic cation/ergothioneine transporter), member 4
Sequence ID:NM_003059
RefSeqGene ID:NG_012129
Entrez Gene ID:6583
Ensembl ID:ENSG00000197208

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CROHN DISEASE-ASSOCIATED GROWTH FAILUREDEFB4A
DLG5
IL23R
IL6
NOD2
RHEUMATOID ARTHRITISCD244
CIITA
HLA-DRB1
HLA-DRB1
HLA-DRB1
IL10
NFKBIL1
PADI4
PTPN22
RUNX1
RUNX1
STAT4
STAT4

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 131630163 - 131679861

NM_003059 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1558131630144131630701
559662131647853131647956
663817131649306131649460
818989131657876131658047
9901116131662969131663095
11171211131667448131667542
12121426131670410131670624
14271609131671510131671692
16101745131676257131676392
17462190131679452131679896

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5186192Full LengthBC028313solute carrier family 22 (organic cation/ergothioneine transporter), member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003050  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003059 NP_003050 Q9H015 Sugar_tr
MFS_1

Related Sequences

 
mRNAGenPeptSwissProt
BC028313 AAH28313 Q9H015
DQ890816 ABM81742  
DQ893972 ABM84898  
AB007448 BAA23356 Q9H015
Y09881 CAA71007 Q9H015

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC22A4 NP_003050 M.musculus Slc22a4 30805 Gene Info NP_062661 85
A.thaliana 1-Oct 843656   NP_565059 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)