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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYT1, synaptotagmin I
Sequence ID:NM_001135805
NM_001135806
NM_005639
Entrez Gene ID:6857
Ensembl ID:ENSG00000067715

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12cen-q21

Chromosomal Position (from UCSC)

Chromosomal Position:12: 79257772 - 79844059

 Exon Info From UCSC:
NM_001135805
NM_001135806
NM_005639

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6187902Full LengthBC058917synaptotagmin I

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005630  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135805 NP_001129277    
NM_001135806 NP_001129278    
NM_005639 NP_005630 P21579 C2

Related Sequences

 
mRNAGenPeptSwissProt
M55047 AAA60609 P21579
BC058917 AAH58917 P21579
AK094616 BAG52897 P21579
AK126908 BAG54392 P21579
CR627387 CAH10483 P21579

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYT1 NP_005630 M.musculus Syt1 20979 Gene Info NP_033332 98
R.norvegicus Syt1 25716   NP_001028852 98
A.gambiae AgaP_AGAP007942 1278013   XP_317535 65
D.melanogaster Syt1 33473   NP_523460 62
C.elegans snt-1 174120   NP_495394 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)