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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. JHDM1D, Jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)
Sequence ID:NM_030647
Entrez Gene ID:80853
Ensembl ID:ENSG00000006459

Database Links

UniGeneEntrez GeneEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 139784547 - 139799770

 Exon Info From UCSC:
NM_030647

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030647 NP_085150 Q6ZMT4  

Related Sequences

 
mRNAGenPeptSwissProt
BC127007 AAI27008 A0JNV9
AB051505 BAB21809 Q6ZMT4
AK131497 BAD18641 Q6ZMT4
BX641017 CAE46011 Q6ZMT4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens JHDM1D NP_085150 M.musculus Jhdm1d 338523 Gene Info NP_001028602 90
C.elegans F29B9.2 177232   NP_500611 38
C.elegans F43G6.6 174812   NP_496520 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)