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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RTN4R, Reticulon 4 receptor
Sequence ID:NM_023004
RefSeqGene ID:NG_012176
Entrez Gene ID:65078
Ensembl ID:ENSG00000040608

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
SCHIZOAFFECTIVEDISORDERAKT1
APOL1
APOL2
APOL4
CHI3L1
CHI3L1
COMT
DAO
DAOA
DISC1
DISC2
DRD3
DTNBP1
HTR2A
LGR4
MTHFR
MTHFR
SYN2

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 20229226 - 20255627

NM_023004 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
817012022893920230632
170219242025559320255815

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4040540Full LengthBC011787reticulon 4 receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075380  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023004 NP_075380 Q9BZR6 LRR_1

Related Sequences

 
mRNAGenPeptSwissProt
AF283463 AAG53612 Q9BZR6
BC011787 AAH11787 Q9BZR6
DQ892891 ABM83817  
DQ896138 ABM87137  
AL834449 CAD39109 Q9BZR6
CR456360 CAG30246 Q9BZR6
CU013070 CAK54501  
CU013358 CAK54800  
AM393268 CAL38146  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RTN4R NP_075380 M.musculus Rtn4r 65079 Gene Info NP_075358 89
R.norvegicus Rtn4r 113912   NP_446065 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)