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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP188, nucleoporin 188kDa
Sequence ID:NM_015354
Entrez Gene ID:23511
Ensembl ID:ENSG00000095319

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 131761583 - 131769373

 Exon Info From UCSC:
NM_015354

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100064128Full LengthBC160096nucleoporin 188kDa
3461492IncompleteBC005407nucleoporin 188kDa
3861295IncompleteBC040352nucleoporin 188kDa
5518173IncompleteBC111045nucleoporin 188kDa

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015354 NP_056169 Q5SRE5  

Related Sequences

 
mRNAGenPeptSwissProt
BC005407 AAH05407 Q9BS12
BC040352 AAH40352 Q5SRE5
BC111045 AAI11046 Q5SRE5
BC160096 AAI60096  
D79991 BAA11486 Q5SRE5
BX537774 CAD97835 Q5SRE5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP188 NP_056169 M.musculus Nup188 227699 Gene Info NP_938046 95
R.norvegicus Nup188 366016   XP_345336 95
A.gambiae AgaP_AGAP005193 1274899   XP_314091 27
D.melanogaster CG8771 36397   NP_610810 24

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)