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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLTF, Helicase-like transcription factor
Sequence ID:NM_003071
NM_139048
Entrez Gene ID:6596
Ensembl ID:ENSG00000071794

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3q25.1-q26.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 148749944 - 148804123

 Exon Info From UCSC:
NM_003071
NM_139048

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6015181Full LengthBC044659helicase-like transcription factor
3686165IncompleteBC005260helicase-like transcription factor
3884667IncompleteBC015498helicase-like transcription factor
4697217IncompleteBC030976helicase-like transcription factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620636  NP_003062  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003071 NP_003062 Q14527 zf-C3HC4
SNF2_N
Helicase_C
NM_139048 NP_620636 Q14527 zf-C3HC4
SNF2_N
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProt
L34673 AAA67436 Q14527
S64671 AAB27691 Q14527
BC005260 AAH05260 Q05DQ5
BC015498 AAH15498 Q05DF7
BC030976 AAH30976 Q05BZ6
BC044659 AAH44659 Q14527
EU446704 ABZ92233  
AB209052 BAD92289 Q59GQ7
AK291231 BAF83920 A8K5B6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLTF NP_620636 M.musculus Hltf 20585 Gene Info NP_033236 84
R.norvegicus Hltf 295568   NP_001099948 84
A.thaliana AT5G05130 830395   NP_196132 42
N.crassa NCU07975 3878825   XP_962645 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)