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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PROSC, proline synthetase co-transcribed homolog (bacterial)
Sequence ID:NM_007198
Entrez Gene ID:11212
Ensembl ID:ENSG00000147471

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 37620112 - 37636318

NM_007198 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11763762010037620275
1772843762304337623150
2853203762322837623263
3213963762379737623872
3975313763027237630406
5326743763285637632998
6757733763343537633533
77425683763549037637284

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3546307Full LengthBC012334proline synthetase co-transcribed homolog (bacterial)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009129  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007198 NP_009129 O94903 Ala_racemase_N

Related Sequences

 
mRNAGenPeptSwissProt
BC012334 AAH12334 O94903
EU831720 ACE86554  
EU831636 ACE87236  
AK291135 BAF83824 A8K520
AK021923 BAG51058 B3KMP6
AL136616 CAB66551 O94903
CR533532 CAG38563 O94903

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PROSC NP_009129 M.musculus Prosc 114863 Gene Info NP_473398 87
R.norvegicus Prosc 306544   NP_001100790 85
A.thaliana AT1G11930 837744   NP_563897 56
D.melanogaster CG1983 43588   NP_651776 51
A.gambiae AgaP_AGAP001621 1281553   XP_321478 48
S.pombe SPAC644.09 2543658   NP_593877 48
A.thaliana AT4G26860 828793   NP_001190850 47
C.elegans F09E5.8 173906   NP_495001 47
S.cerevisiae YBL036C 852244   NP_009517 47
N.crassa NCU03579 3872168   XP_956018 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)