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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TRAP1, TNF receptor-associated protein 1
Sequence ID:NM_016292
Entrez Gene ID:10131
Ensembl ID:ENSG00000126602

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 3708038 - 3767508

 Exon Info From UCSC:
NM_016292

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4131231Full LengthBC018950TNF receptor-associated protein 1
4648083Full LengthBC023585TNF receptor-associated protein 1
3138548IncompleteBC001455TNF receptor-associated protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057376  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016292 NP_057376 Q12931 HSP90
HATPase_c

Related Sequences

 
mRNAGenPeptSwissProt
U12595 AAA87704 Q12931
AF043254 AAC02679 Q12931
AF154108 AAF15314 Q12931
BC001455 AAH01455 Q9BV61
BC018950 AAH18950 Q12931
BC023585 AAH23585 Q12931
DQ893476 ABM84402  
DQ896346 ABM87345  
JX481354 AFS69159 K0A7K7
AK093344 BAC04139 Q8N9Z3
AB209805 BAD93042 Q59EK6
AK223049 BAD96769 Q53G55
AK223076 BAD96796 Q53G55
AK223205 BAD96925 Q53FS6
AK057620 BAG51942 Q5CAQ4
AK299127 BAG61180 B4DR68
AJ890085 CAI64498 Q5CAQ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TRAP1 NP_057376 M.musculus Trap1 68015 Gene Info NP_080784 88
R.norvegicus Trap1 287069   NP_001034090 88
A.gambiae AgaP_AGAP010691 1272492   XP_311405 57
D.melanogaster Trap1 35559   NP_477439 54
C.elegans R151.7 176019   NP_741220 48
P.falciparum PF11_0188 810735   XP_001347859 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)