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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SDF2L1, Stromal cell-derived factor 2-like 1
Sequence ID:NM_022044
Entrez Gene ID:23753
Ensembl ID:ENSG00000128228

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 21996605 - 21998588

NM_022044 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12712199654121996811
2724682199715021997346
4698732199818221998586

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146871Full LengthBC132849stromal cell-derived factor 2-like 1
40146873Full LengthBC132851stromal cell-derived factor 2-like 1
100000523Full LengthBC139837stromal cell-derived factor 2-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071327  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022044 NP_071327 Q9HCN8 MIR

Related Sequences

 
mRNAGenPeptSwissProt
BC132849 AAI32850 Q9HCN8
BC132851 AAI32852 Q9HCN8
BC139837 AAI39838  
AF277316 AAK69113 Q9HCN8
AY359118 AAQ89476 Q9HCN8
AB043007 BAB18277 Q9HCN8
CR456570 CAG30456 Q9HCN8
CU013169 CAK54600  
CU013457 CAK54899  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SDF2L1 NP_071327 R.norvegicus Sdf2l1 680945   NP_001102903 91
M.musculus Sdf2l1 64136 Gene Info NP_071719 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)