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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCFD2, sec1 family domain containing 2
Sequence ID:NM_152540
Entrez Gene ID:152579
Ensembl ID:ENSG00000184178

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 53739952 - 54232215

NM_152540 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3211085373915153740227
110912285375191353752032
122913635377362353773757
136415095378689153787036
151017595401149954011748
176019355413999254140167
193620635417980254179929
206422325421876454218932
223332045423127054232241

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4866354Full LengthBC021137sec1 family domain containing 2
5176029Full LengthBC032453sec1 family domain containing 2
3860908IncompleteBC012458sec1 family domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_689753  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_152540 NP_689753 Q8WU76 Sec1

Related Sequences

 
mRNAGenPeptSwissProt
BC012458 AAH12458 Q8WU76
BC021137 AAH21137 Q8WU76
BC032453 AAH32453 Q8WU76
AY299407 AAP57259 Q8WU76
GQ129374 ACT64508  
GQ129375 ACT64509  
AK096833 BAC04872 Q8WU76

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCFD2 NP_689753 R.norvegicus Scfd2 498353   NP_001017499 85
M.musculus Scfd2 212986 Gene Info NP_001108132 83
A.thaliana AT2G42700 818870   NP_001189734 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)