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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLN5, Ceroid-lipofuscinosis, neuronal 5
Sequence ID:NM_006493
RefSeqGene ID:NG_009064
Entrez Gene ID:1203
Ensembl ID:ENSG00000102805

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CEROID LIPOFUSCINOSIS, NEURONAL, 5 

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q21.1-q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 77564794 - 77576652

NM_006493 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13487756605877566405
3495147756919777569362
5157407757003677570261
74127997757459277576650

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100016512Full LengthBC153154ceroid-lipofuscinosis, neuronal 5
100069277Full LengthBC172583ceroid-lipofuscinosis, neuronal 5
100015168BC146274ceroid-lipofuscinosis, neuronal 5

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006493 NP_006484 O75503  

Related Sequences

 
mRNAGenPeptSwissProt
AF068227 AAC27614 O75503
BC146274 AAI46275  
BC153154 AAI53155  
BC172583 AAI72583  
AK075109 BAG52069 B3KQK7
AK304001 BAG64918 B4E1V6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLN5 NP_006484 M.musculus Cln5 211286 Gene Info NP_001028414 79
R.norvegicus RGD1564125 310166   XP_226859 78
R.norvegicus Cln5 306128   XP_224477 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)