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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LHX5, LIM homeobox 5
Sequence ID:NM_022363
Entrez Gene ID:64211
Ensembl ID:ENSG00000089116

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 113900693 - 113909877

NM_022363 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1669113900693113901361
670835113905060113905225
8361113113905931113906208
11141337113906926113907149
13382084113909130113909876

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40010942Full LengthBC109230LIM homeobox 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_071758  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022363 NP_071758 Q9H2C1 Homeobox
LIM

Related Sequences

 
mRNAGenPeptSwissProt
AF291181 AAG36963 Q9H2C1
BC109230 AAI09231 Q9H2C1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LHX5 NP_071758 M.musculus Lhx5 16873 Gene Info NP_032525 99
R.norvegicus Lhx5 124451   NP_620605 99

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)