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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. GCN1L1, GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
Sequence ID:NM_006836
Entrez Gene ID:10985
Ensembl ID:ENSG00000089154

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q24.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 120599292 - 120632503

 Exon Info From UCSC:
NM_006836

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860118Full LengthBC153881GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
4441875IncompleteBC046177GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
4442636IncompleteBC064346GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
4470739IncompleteBC040172GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
4622972IncompleteBC021129GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
5181594IncompleteBC032335GCN1 general control of amino-acid synthesis 1-like 1 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006827  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006836 NP_006827   Arm
HEAT
HEAT_PBS

Related Sequences

 
mRNAGenPeptSwissProt
U77700 AAC51648 Q92616
U88836 AAD00655 Q92616
U88837 AAD00656 Q92616
BC021129 AAH21129 Q92616
BC032335 AAH32335 Q92616
BC046177 AAH46177 Q92616
BC064346 AAH64346 Q92616
BC153881 AAI53882 Q92616
D86973 BAA13209 Q92616
AK297271 BAG59744 B4DM32
BK006575 DAA33878 E1NZA1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GCN1L1 NP_006827 M.musculus Gcn1l1 231659 Gene Info NP_766307 94
R.norvegicus Gcn1l1 690632   NP_001162135 94
A.gambiae AgaP_AGAP001700 1281475   XP_321391 48
D.melanogaster CG17514 3355040   NP_001015316 44
A.thaliana ILA 842787   NP_176659 36
S.cerevisiae GCN1 852680   NP_011320 36
C.elegans Y48G9A.3 190051   NP_497506 35
N.crassa NCU05803 3876194   XP_960063 34
S.pombe SPAC18G6.05c 2542235   NP_593669 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)