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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPGRIP1L, RPGRIP1-like
Sequence ID:NM_001127897
NM_015272
RefSeqGene ID:NG_008991
Entrez Gene ID:23322
Ensembl ID:ENSG00000103494

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
COACH SYNDROMECC2D2A
TMEM67
JOUBERT SYNDROME 7 
MECKEL SYNDROME 5 

Cytogenetic Location (from UniGene)

Cytogenetic Location:16q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 53634599 - 53721867

 Exon Info From UCSC:
NM_001127897
NM_015272

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9020422Full LengthBC136433RPGRIP1-like
4697938IncompleteBC017977RPGRIP1-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056087  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001127897 NP_001121369    
NM_015272 NP_056087 Q68CZ1 C2

Related Sequences

 
mRNAGenPeptSwissProt
BC017977 AAH17977 Q68CZ1
BC136433 AAI36434 B7ZKJ9
AB023222 BAA76849 Q68CZ1
AK304790 BAG65540 B4E3M8
CR749645 CAH18439 Q68CZ1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPGRIP1L NP_056087 M.musculus Rpgrip1l 244585 Gene Info NP_775607 85
R.norvegicus Rpgrip1l 307724   NP_001100884 85
C.elegans C09G5.8 174654   NP_496313 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)