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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLDN9, claudin 9
Sequence ID:NM_020982
Entrez Gene ID:9080
Ensembl ID:ENSG00000213937

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:16: 3062456 - 3064506

NM_020982 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1205030624563064505

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6172607Full LengthBC051870claudin 9
30364848Full LengthBC065830claudin 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066192  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020982 NP_066192 O95484 PMP22_Claudin

Related Sequences

 
mRNAGenPeptSwissProt
BC051870 AAH51870 O95484
BC065830 AAH65830 O95484
AY390431 AAQ97597 Q6TPI7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLDN9 NP_066192 M.musculus Cldn9 56863 Gene Info NP_064689 97
R.norvegicus Cldn9 287099   NP_001011889 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)