Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLSTN1, calsyntenin 1
Sequence ID:NM_001009566
NM_014944
Entrez Gene ID:22883
Ensembl ID:ENSG00000171603

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 9789085 - 9884584

 Exon Info From UCSC:
NM_001009566
NM_014944

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5263192Full LengthBC033902calsyntenin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055759  NP_001009566  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001009566 NP_001009566 O94985 Cadherin
NM_014944 NP_055759   Cadherin

Related Sequences

 
mRNAGenPeptSwissProt
BC033902 AAH33902 O94985
AF438482 AAQ04552 O94985
AY753301 AAV30551 O94985
DQ891263 ABM82189  
DQ894450 ABM85376  
AB020718 BAA74934 O94985
AK289798 BAF82487 O94985
AK001591 BAG50945 B3KMD3
AK056820 BAG51814 B3KPV2
AK304813 BAG65563 B4E3Q1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLSTN1 NP_001009566 M.musculus Clstn1 65945 Gene Info NP_075538 93
R.norvegicus Clstn1 313717   XP_243040 93
C.elegans casy-1 174006   NP_001021110 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)