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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ATP6V1B2, ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2
Sequence ID:NM_001693
Entrez Gene ID:526
Ensembl ID:ENSG00000147416

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 20054891 - 20078211

 Exon Info From UCSC:
NM_001693

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3502278Full LengthBC003100ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2
4821062Full LengthBC030640ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2
3352651IncompleteBC007309ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001684  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001693 NP_001684 P21281 ATP-synt_ab
ATP-synt_ab_C
ATP-synt_ab_N

Related Sequences

 
mRNAGenPeptSwissProt
M60346 AAA35610 P21281
L35249 AAA58661 P21281
BC003100 AAH03100 P21281
BC007309 AAH07309 P21281
BC030640 AAH30640 P21281
DQ891837 ABM82763  
DQ895023 ABM85949  
AB208806 BAD92043 Q59HF3
AK312372 BAG35290 P21281
AK294163 BAG57486 B4DFM5
AK298819 BAG60951 B4DQI9
X62949 CAA44721 P21281

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP6V1B2 NP_001684 R.norvegicus Atp6v1b2 117596   NP_476561 99
M.musculus Atp6v1b2 11966 Gene Info NP_031535 99
A.gambiae AgaP_AGAP002884 1273084   XP_312029 95
D.melanogaster Vha55 41550   NP_001163597 91
C.elegans vha-12 180692   NP_508711 86
S.cerevisiae VMA2 852424   NP_009685 81
A.thaliana AT1G20260 838614   NP_173451 80
A.thaliana AT1G76030 843934   NP_177729 80
C.elegans tag-300 172137   NP_491518 79
N.crassa NCU08515 3879313   XP_963165 79
S.pombe vma2 2543408   NP_594623 78
P.falciparum PFD0305c 812397   XP_001351374 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)