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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GMCL1, Germ cell-less, spermatogenesis associated 1
Sequence ID:NM_178439
Entrez Gene ID:64395
Ensembl ID:ENSG00000087338

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 70056831 - 70106763

 Exon Info From UCSC:
NM_178439

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3030159Full LengthBC007420germ cell-less homolog 1 (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848526  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178439 NP_848526 Q53SE7
Q96IK5
BTB

Related Sequences

 
mRNAGenPeptSwissProt
BC007420 AAH07420 Q53SE7
Q96IK5
EU832722 ACE87054  
EU832645 ACE87736  
AK023119 BAB14416 Q96IK5
AK023261 BAB14494 Q96IK5
AK024042 BAB14796 Q96IK5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GMCL1 NP_848526 M.musculus Gmcl1 23885 Gene Info NP_035948 92
R.norvegicus Gmcl1 312516   NP_001029103 92
A.gambiae AgaP_AGAP011686 1280950   XP_320823 39
D.melanogaster gcl 35864   NP_724708 38
C.elegans gcl-1 190457   NP_502585 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)