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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CCDC88A, coiled-coil domain containing 88A
Sequence ID:NM_001135597
NM_001254943
NM_018084
RefSeqGene ID:NG_031944
Entrez Gene ID:55704
Ensembl ID:ENSG00000115355

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2p16.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 55515225 - 55546140

 Exon Info From UCSC:
NM_001135597
NM_018084

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9052840Full LengthBC144320coiled-coil domain containing 88A
40146758Full LengthBC132736coiled-coil domain containing 88A
3885871IncompleteBC015539KIAA1212
3906864IncompleteBC041160coiled-coil domain containing 88A
4108973IncompleteBC060037coiled-coil domain containing 88A
5263034IncompleteBC045829KIAA1212
5583156IncompleteBC032683KIAA1212
6176807IncompleteBC078168coiled-coil domain containing 88A
6526320IncompleteBC056885KIAA1212

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001135597 NP_001129069    
NM_001254943 NP_001241872    
NM_018084 NP_060554    

Related Sequences

 
mRNAGenPeptSwissProt
AF112218 AAF17206 Q9UI01
BC041160 AAH41160 Q86YH1
BC060037 AAH60037 Q6PAV0
BC078168 AAH78168 Q6DCA5
BC132736 AAI32737 Q3V6T2
BC144320 AAI44321 B7ZM78
D64159 BAA21515 O14997
AB033038 BAA86526 Q9ULK8
AK001254 BAA91584 Q9NW05
AB201172 BAE44387 Q3V6T2
AB125644 BAF44475 Q3V6T2
AK124603 BAG54056 B3KW94
AK299823 BAG61692 B4DSN0
BX537985 CAD97945 Q3V6T2
BX538154 CAD98038 Q3V6T2
BX648138 CAI46020 Q3V6T2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCDC88A NP_001129069 M.musculus Ccdc88a 108686 Gene Info NP_789811 95
R.norvegicus Ccdc88a 305605   XP_223709 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)