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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCNH, cyclin H
Sequence ID:NM_001199189
NM_001239
Entrez Gene ID:902
Ensembl ID:ENSG00000134480

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q13.3-q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 86689233 - 86707111

Transcript StartTranscript EndChromosomal Start Chromosomal End
152338669008286690300
2342948669086086690920
2954068669521086695321
4074778669751886697588
4786418670066086700823
6428528670379286704002
8539268670510686705179
92710498670704086707162
105013918670849486708835

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3930062Full LengthBC005280cyclin H
4082151Full LengthBC016705cyclin H
4102297Full LengthBC016823cyclin H
4277337Full LengthBC022351cyclin H

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001199189 NP_001186118    
NM_001239 NP_001230 P51946  

Related Sequences

 
mRNAGenPeptSwissProt
U11791 AAA21361 P51946
U12685 AAA57006 P51946
BC005280 AAH05280 P51946
BC016705 AAH16705 P51946
BC016823 AAH16823 P51946
BC022351 AAH22351 P51946
DQ892550 ABM83476  
DQ895761 ABM86687  
AB209342 BAD92579 Q59FW7
AK291720 BAF84409 A8K6Q5
CR407658 CAG28586 P51946

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCNH NP_001230 M.musculus Ccnh 66671 Gene Info NP_075732 95
R.norvegicus Ccnh 84389   NP_443213 94
A.gambiae AgaP_AGAP008417 1277560   XP_317030 49
D.melanogaster CycH 40429   NP_524207 49
S.pombe mcs2 2540555   NP_595776 40
A.thaliana CYCH;1 832824   NP_198114 36
C.elegans cyh-1 190078   NP_494564 35
S.cerevisiae CCL1 856136   NP_015350 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta