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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LARP1, La ribonucleoprotein domain family, member 1
Sequence ID:NM_015315
Entrez Gene ID:23367
Ensembl ID:ENSG00000155506

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q33.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 154134888 - 154194459

 Exon Info From UCSC:
NM_015315

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3138935Full LengthBC001460La ribonucleoprotein domain family, member 1
4099180IncompleteBC038220La ribonucleoprotein domain family, member 1
4304831IncompleteBC010144La ribonucleoprotein domain family, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056130  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_015315 NP_056130   La

Related Sequences

 
mRNAGenPeptSwissProt
BC001460 AAH01460 Q6PKG0
BC033856 AAH33856 Q6PKG0
EU446783 ABZ92312  
JF432319 ADZ15536  
AB018274 BAA34451 Q6PKG0
AK091465 BAC03668 Q6PKG0
AK312203 BAG35136 B2R5I9
AL133034 CAB61364 Q6PKG0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LARP1 NP_056130 R.norvegicus Larp1 303158   XP_220446 93
M.musculus Larp1 73158 Gene Info NP_082727 92
A.gambiae AgaP_AGAP005291 1270398   XP_001237175 48
D.melanogaster larp 53567   NP_733244 48
A.thaliana AT5G21160 832242   NP_568409 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)