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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. DDB1, damage-specific DNA binding protein 1, 127kDa
Sequence ID:NM_001923
RefSeqGene ID:NG_032697
Entrez Gene ID:1642
Ensembl ID:ENSG00000167986

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12-q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 61067416 - 61100549

 Exon Info From UCSC:
NM_001923

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3845478Full LengthBC011686damage-specific DNA binding protein 1, 127kDa
5563018Full LengthBC050530damage-specific DNA binding protein 1, 127kDa
6063274Full LengthBC051764damage-specific DNA binding protein 1, 127kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001914  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001923 NP_001914 Q16531 CPSF_A

Related Sequences

 
mRNAGenPeptSwissProt
L40326 AAA62838 Q16531
U32986 AAA88883 Q16531
U18299 AAC50349 Q16531
BC011686 AAH11686 Q16531
BC050530 AAH50530 Q16531
BC051764 AAH51764 Q16531
AK312436 BAG35345 Q16531
AK294341 BAG57611 B4DG00
AK299650 BAG61570 B4DSA8
AK303032 BAG64157 B4DZP5
AK294493 BAH11787 B7Z2A1
AK302924 BAH13845 B7Z859
AJ002955 CAA05770 Q16531

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens DDB1 NP_001914 M.musculus Ddb1 13194 Gene Info NP_056550 100
R.norvegicus Ddb1 64470   XP_002728912 100
A.gambiae AgaP_AGAP002472 1273487   XP_312466 66
D.melanogaster pic 41611   NP_650257 62
A.thaliana DDB1A 825890   NP_192451 56
A.thaliana DDB1B 827857   NP_193842 55
N.crassa NCU06605 3878495   XP_962347 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)